MG-RAST 3.3.6 release notes (API changes and new Search implementation) [July 2013]

User documentation and tech report available

We have made a PDF with a manual and tech report available describing MG-RAST in detail.

New search function

As many users have no doubt noticed the search function prior to version 3.3.6 was overwhelmed by the amount of data in the system. We have implemented a new search function that replaces the old capabilities but is significantly faster than prior to 3.3.6.

Creation of collections from search results

To create a collection from search results first select the metagenomes with the checkboxes and then click the “create collection” button. The collections created are displayed in the metagenome selection widget on the analysis page where they can be used for comparison, either as individual metagenomes or as a group.

Anonymous reviewer access

To grant reviewers access to a project while preserving their anonymity we added a ‘Create Reviewer Access Token’ button on the project page which is visible when you click on the ‘Share Project’ link. This generates a token that can be sent to the publisher to pass on to reviewers who can use the included link to get anonymous access to the project. The number of reviewers who have accessed the project will be displayed to the owner in the list of users the project is shared with, but the identity of the reviewers is not disclosed. The owner of the project can revoke the token at any time to disable access.

Some changes to the programmers interface (API) [still beta]

We have made some changes to the programmers interface that will affect existing deployed clients and third party tools. We will notify all known API users separately.

Misc. changes and bug fixes

Many miscellaneous changes and bug fixes have been implemented, see the github pages for details. See here:

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